PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g27170.1.p
Common NameBRADI_4g27170, LOC100846229
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 315aa    MW: 35263.1 Da    PI: 8.4158
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g27170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00017163182120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++Cp C k+Fsr  nL+ H+
  Bradi4g27170.1.p 163 FTCPVCCKTFSRYNNLQMHM 182
                       89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.52E-6154185No hitNo description
Gene3DG3DSA:3.30.160.608.1E-6163182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.847163185IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
PROSITE profilePS501578.829267304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MANPYAFLRR PHIDPFFPFQ RSLVSSPSSP TKQALPLLSL LPAASSHDHN KTLSSCGYAG  60
DHRQHKKEDD QDMNISLQIG PPSPNCALNL VNSCAIDAPV AASQDQCSGG DQKVEEEEEE  120
LEDDDGGDGS DDLCLEYLAV GKLTKGKYWI PTVTQILIGP THFTCPVCCK TFSRYNNLQM  180
HMWGHGVQYR RGPESLRGTQ PAAMLRLPCF CCAPGCRSHV DHPRARPLKD FRTLQTHYKR  240
RHCGKPFLCR KCGKPLAVRG DWRTHEKNCG RRWHCACGSD FKHKRSLKDH IRAFGHDLHV  300
ERPPACYNRP SSPP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574671e-176AK357467.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1054C05.
GenBankAK3594101e-176AK359410.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1096E11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576382.10.0PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-97ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLI1IP280.0I1IP28_BRADI; Uncharacterized protein
STRINGBRADI4G27170.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.15e-96C2H2 family protein